PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00352.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YB
Protein Properties Length: 232aa    MW: 25205.9 Da    PI: 8.2008
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00352.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB166.14.4e-5264160197
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    vreqd+++Pianv+rim+++lP +akis+daket+qecvse+isf+t+ea+d+cqre+rkti+++d+lwa+++lGf++yvepl+++l+kyre e+e
  Jcr4S00352.50  64 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFITGEANDRCQREQRKTITAEDVLWAMGKLGFDEYVEPLSLFLSKYRESENE 159
                    69*******************************************************************************************998 PP

          NF-YB  97 k 97 
                    +
  Jcr4S00352.50 160 R 160
                    7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.2E-4963164IPR009072Histone-fold
SuperFamilySSF471132.58E-3667163IPR009072Histone-fold
PfamPF008083.5E-2570134IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.6E-1798116No hitNo description
PROSITE patternPS006850101117IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.6E-17117135No hitNo description
PRINTSPR006156.6E-17136154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERGGRFHRY RRHAKQPSIS AGASSADQAN SVLPSTLNPS HANGSNSATA EATQKQQQPG  60
LYIVREQDQY MPIANVIRIM RRILPPHAKI SDDAKETIQE CVSEYISFIT GEANDRCQRE  120
QRKTITAEDV LWAMGKLGFD EYVEPLSLFL SKYRESENER NSSVRDPILR RSGVTVADYG  180
NFPMPPFVPG LHMGGGSGSG SGGAGGSSGG GAGGSSYSSN PQINYDPFAQ YK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-3965155393NF-YB
4awl_B1e-3965155494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-3965155494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220200.0KF022020.1 Jatropha curcas leafy-cotyledon protein 1 (LEC1-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071003.11e-149PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ84W665e-63NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A067KT251e-149A0A067KT25_JATCU; Uncharacterized protein
STRINGVIT_00s0956g00020.t012e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.12e-64nuclear factor Y, subunit B6